Illumina MiSeq paired end sequencing of SAMD00113708 - SRA

DRX119893: Illumina MiSeq paired end sequencing of SAMD00113708
1 ILLUMINA (Illumina MiSeq) run: 22,003 spots, 13.2M bases, 7.2Mb downloads

Submitted by: Tokyo Univetsity of Agriculture (TUAGRI)

Study: Diversity and antimicrobial activity relationship of Japanese quail cathelicidin.

PRJDB6799 • DRP011205 • All experiments • All runs

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The Japanese quail has several advantages as a low-fat meat bird with high immunity against diseases. Cathelicidins (CATHs) are host defense peptides with conservation across a vertebrate species and play an important role in innate immunity. Furthermore, the funcrion of host defense peptides are altered by amino acid substitutions. Then, we studied the diversity of cathelicidin genes in avian and detected SNPs in all CATH genes.

Sample: Coturnix japonica is Y (yellow) strain No.8 and targeted CATH3 gene.

SAMD00113708 • DRS365014 • All experiments • All runs

Organism: Coturnix japonica

Library:

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: GENOMIC

Selection: PCR

Layout: PAIRED

Construction protocol:

Spot descriptor:

1 forward303 reverse

Runs: 1 run, 22,003 spots, 13.2M bases, 7.2Mb

Run	# of Spots	# of Bases	Size	Published
DRR127149	22,003	13.2M	7.2Mb	2024-02-21

ID:: 31969192

SRA

Sequence Read Archive

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